diff --git a/CHANGELOG.md b/CHANGELOG.md
index e8bb075..577882c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,7 @@ Full release notes with details on each version: [GitHub Releases](https://githu
 
 ## Unreleased
 
+- Fix: the `GRAPH_REPORT.md` header now shows the actual scan root instead of a literal `.`. The split-skill runbook passed `'.'` as the `root` argument to `report.generate` in Steps 4 and 5, so a `/graphify /some/path` run produced a report titled `# Graph Report - .`. It now passes `'INPUT_PATH'` (matching the monoliths, which were already correct). Display-only — no path written to `graph.json`/`manifest.json` was affected (#1419).
 - Fix: the skill runbooks now write a portable `manifest.json`. Step 9 (full build) and the `--update` reference called `save_manifest(...)` without `root=`, so manifest keys were stored as absolute paths; cloning or moving the repo then broke `graphify --update` — every cached file missed and the whole corpus re-extracted. All four runbook call sites (the lean-core `skill.md`, the Aider/Devin monoliths, and the shared `--update` reference) now pass `root='INPUT_PATH'`, relativizing keys to the scan root to match the native `graphify update` path. The monolith change is registered as a new sanctioned change-class in the round-trip guard (#1417).
 - Fix: hyperedge `source_file` is now relativized to the scan root like nodes and edges. `build_from_json(root=...)` relativized `source_file` on `nodes[]` and `links[]`, but stored `graph.hyperedges[]` verbatim, so a semantic subagent's absolute path (e.g. `/Users/.../CLAUDE.md`) leaked into `graph.json`. The fix lives in `build_from_json` (not `to_json`, which has no `root` to relativize against) and mirrors the existing node/edge handling (#1418).
 - Fix: the `GRAPHIFY_OUT` override is now honoured everywhere instead of a hardcoded `"graphify-out"` literal. The name is consolidated into a single `graphify.paths` module (was duplicated across `__main__`, `cache`, and `watch`); `security.validate_graph_path`'s `base=None` discovery + fallback, `callflow_html`'s project-root resolution, and the post-commit/post-checkout hook bodies (which now read the env var at hook-run time) all use it. Previously a renamed output dir validated against the wrong base or made the hook miss `.graphify_root` (#1423).
diff --git a/graphify/skill-amp.md b/graphify/skill-amp.md
index 411b315..de0dbe2 100644
--- a/graphify/skill-amp.md
+++ b/graphify/skill-amp.md
@@ -424,7 +424,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -473,7 +473,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-claw.md b/graphify/skill-claw.md
index 8e6c100..6c7060a 100644
--- a/graphify/skill-claw.md
+++ b/graphify/skill-claw.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-codex.md b/graphify/skill-codex.md
index a2b77e6..f6080f3 100644
--- a/graphify/skill-codex.md
+++ b/graphify/skill-codex.md
@@ -424,7 +424,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -473,7 +473,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-copilot.md b/graphify/skill-copilot.md
index 8e6c100..6c7060a 100644
--- a/graphify/skill-copilot.md
+++ b/graphify/skill-copilot.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-droid.md b/graphify/skill-droid.md
index 40178e8..47323b6 100644
--- a/graphify/skill-droid.md
+++ b/graphify/skill-droid.md
@@ -424,7 +424,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -473,7 +473,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-kilo.md b/graphify/skill-kilo.md
index 8e54ec8..2255c91 100644
--- a/graphify/skill-kilo.md
+++ b/graphify/skill-kilo.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-kiro.md b/graphify/skill-kiro.md
index 8e6c100..6c7060a 100644
--- a/graphify/skill-kiro.md
+++ b/graphify/skill-kiro.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-opencode.md b/graphify/skill-opencode.md
index 373473b..893149e 100644
--- a/graphify/skill-opencode.md
+++ b/graphify/skill-opencode.md
@@ -419,7 +419,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -468,7 +468,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-pi.md b/graphify/skill-pi.md
index 8e6c100..6c7060a 100644
--- a/graphify/skill-pi.md
+++ b/graphify/skill-pi.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-trae.md b/graphify/skill-trae.md
index 8ed6ca2..01cccb1 100644
--- a/graphify/skill-trae.md
+++ b/graphify/skill-trae.md
@@ -425,7 +425,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -474,7 +474,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-vscode.md b/graphify/skill-vscode.md
index e854363..3016c58 100644
--- a/graphify/skill-vscode.md
+++ b/graphify/skill-vscode.md
@@ -423,7 +423,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -472,7 +472,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill-windows.md b/graphify/skill-windows.md
index 0c7a534..2852de2 100644
--- a/graphify/skill-windows.md
+++ b/graphify/skill-windows.md
@@ -449,7 +449,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -498,7 +498,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/graphify/skill.md b/graphify/skill.md
index 8e6c100..6c7060a 100644
--- a/graphify/skill.md
+++ b/graphify/skill.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-amp.md b/tools/skillgen/expected/graphify__skill-amp.md
index 411b315..de0dbe2 100644
--- a/tools/skillgen/expected/graphify__skill-amp.md
+++ b/tools/skillgen/expected/graphify__skill-amp.md
@@ -424,7 +424,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -473,7 +473,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-claw.md b/tools/skillgen/expected/graphify__skill-claw.md
index 8e6c100..6c7060a 100644
--- a/tools/skillgen/expected/graphify__skill-claw.md
+++ b/tools/skillgen/expected/graphify__skill-claw.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-codex.md b/tools/skillgen/expected/graphify__skill-codex.md
index a2b77e6..f6080f3 100644
--- a/tools/skillgen/expected/graphify__skill-codex.md
+++ b/tools/skillgen/expected/graphify__skill-codex.md
@@ -424,7 +424,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -473,7 +473,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-copilot.md b/tools/skillgen/expected/graphify__skill-copilot.md
index 8e6c100..6c7060a 100644
--- a/tools/skillgen/expected/graphify__skill-copilot.md
+++ b/tools/skillgen/expected/graphify__skill-copilot.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-droid.md b/tools/skillgen/expected/graphify__skill-droid.md
index 40178e8..47323b6 100644
--- a/tools/skillgen/expected/graphify__skill-droid.md
+++ b/tools/skillgen/expected/graphify__skill-droid.md
@@ -424,7 +424,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -473,7 +473,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-kilo.md b/tools/skillgen/expected/graphify__skill-kilo.md
index 8e54ec8..2255c91 100644
--- a/tools/skillgen/expected/graphify__skill-kilo.md
+++ b/tools/skillgen/expected/graphify__skill-kilo.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-kiro.md b/tools/skillgen/expected/graphify__skill-kiro.md
index 8e6c100..6c7060a 100644
--- a/tools/skillgen/expected/graphify__skill-kiro.md
+++ b/tools/skillgen/expected/graphify__skill-kiro.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-opencode.md b/tools/skillgen/expected/graphify__skill-opencode.md
index 373473b..893149e 100644
--- a/tools/skillgen/expected/graphify__skill-opencode.md
+++ b/tools/skillgen/expected/graphify__skill-opencode.md
@@ -419,7 +419,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -468,7 +468,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-pi.md b/tools/skillgen/expected/graphify__skill-pi.md
index 8e6c100..6c7060a 100644
--- a/tools/skillgen/expected/graphify__skill-pi.md
+++ b/tools/skillgen/expected/graphify__skill-pi.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-trae.md b/tools/skillgen/expected/graphify__skill-trae.md
index 8ed6ca2..01cccb1 100644
--- a/tools/skillgen/expected/graphify__skill-trae.md
+++ b/tools/skillgen/expected/graphify__skill-trae.md
@@ -425,7 +425,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -474,7 +474,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-vscode.md b/tools/skillgen/expected/graphify__skill-vscode.md
index e854363..3016c58 100644
--- a/tools/skillgen/expected/graphify__skill-vscode.md
+++ b/tools/skillgen/expected/graphify__skill-vscode.md
@@ -423,7 +423,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -472,7 +472,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill-windows.md b/tools/skillgen/expected/graphify__skill-windows.md
index 0c7a534..2852de2 100644
--- a/tools/skillgen/expected/graphify__skill-windows.md
+++ b/tools/skillgen/expected/graphify__skill-windows.md
@@ -449,7 +449,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -498,7 +498,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/expected/graphify__skill.md b/tools/skillgen/expected/graphify__skill.md
index 8e6c100..6c7060a 100644
--- a/tools/skillgen/expected/graphify__skill.md
+++ b/tools/skillgen/expected/graphify__skill.md
@@ -427,7 +427,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -476,7 +476,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')
diff --git a/tools/skillgen/fragments/core/core.md b/tools/skillgen/fragments/core/core.md
index b4e127b..12b8a16 100644
--- a/tools/skillgen/fragments/core/core.md
+++ b/tools/skillgen/fragments/core/core.md
@@ -362,7 +362,7 @@ if not wrote:
     print('ERROR: refused to shrink graphify-out/graph.json (existing graph has more nodes; #479).')
     print('If this shrink is intentional (you deleted files), re-run a full build with --force.')
     raise SystemExit(1)
-report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, gods, surprises, detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 analysis = {
     'communities': {str(k): v for k, v in communities.items()},
@@ -411,7 +411,7 @@ labels = LABELS_DICT
 # Regenerate questions with real community labels (labels affect question phrasing)
 questions = suggest_questions(G, communities, labels)
 
-report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, '.', suggested_questions=questions)
+report = generate(G, communities, cohesion, labels, analysis['gods'], analysis['surprises'], detection, tokens, 'INPUT_PATH', suggested_questions=questions)
 Path('graphify-out/GRAPH_REPORT.md').write_text(report, encoding=\"utf-8\")
 Path('graphify-out/.graphify_labels.json').write_text(json.dumps({str(k): v for k, v in labels.items()}, ensure_ascii=False), encoding=\"utf-8\")
 print('Report updated with community labels')