- extract graphify/ (code only) instead of . to avoid LLM API key requirement;
the repo root contains docs/skills/.md files that trigger semantic extraction
- use --out . so output writes to ./graphify-out/ not ./graphify/graphify-out/
- remove --out from export html (flag does not exist; HTML auto-written next to graph)
- drop nonexistent --code-only flag from extract command
- add comments explaining each flag's behavior
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>